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Featured Publications
Defective cell-autonomous signalling and antigenic polyreactivity of B-cell receptors from chronic lymphocytic leukaemia stereotyped subset 1.
Cocomazzi PG, Iatrou A, Minici C, Gounari M, Linder AT, Akpınaroğlu C, Patrone M, Broggini L, Frenquelli M, Sarrigeorgiou I, Lymberi P, Petrakis G, Koletsa T, Scarfò L, Agathangelidis A, Jumaa H, Maity PC, Ghia P, Stamatopoulos K, Degano M. Defective cell-autonomous signalling and antigenic polyreactivity of B-cell receptors from chronic lymphocytic leukaemia stereotyped subset 1. Nat Commun 2025 PMID: 41469389, DOI: 10.1038/s41467-025-68040-5.Peer-Reviewed Original ResearchWhy women may live longer than men do? A telomere-length regulated and diet-based entropic assessment.
Öngel ME, Yıldız C, Akpınaroğlu C, Yilmaz B, Özilgen M. Why women may live longer than men do? A telomere-length regulated and diet-based entropic assessment. Clin Nutr 2021, 40: 1186-1191. PMID: 32807581, DOI: 10.1016/j.clnu.2020.07.030.Peer-Reviewed Original Research
2025
Unravelling the nutritional threads with novel associations of cognitive functions and telomerase.
Yildiz C, Akpınaroğlu C, Medina I. Unravelling the nutritional threads with novel associations of cognitive functions and telomerase. Nutr Res Rev 2025, 1-24. PMID: 41340293, DOI: 10.1017/S0954422425100280.Peer-Reviewed Original Research
2018
Association Of Genes With Psychological Factors In Sports
Eken, B. F., Akpınaroğlu, C., Arslan, K. S., Sercan, C., & Ulucan, K. (2018). Effects of genes to psychological factors in sports. J Neurobehav Sci, 5(1), 56-61. DOI: 10.5455/JNBS.1516796381Peer-Reviewed Reviews, Practice Guidelines, Standards, and Consensus Statements
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Media
- Photo by Can Akpinaroglu
On April 10th, Can Akpınaroğlu, a Postgraduate Research Associate (PGA) in the laboratory of Dr. Sajid Khan, presented his research at the Yale Surgery Research Day. His presentation, titled "Integrated Spatial Transcriptomics, Tissue Microarray and Longitudinal Microbiome Profiling to Unravel Sex-Specific Asparagine Metabolism in Late-Stage Colorectal Cancer." detailed a comprehensive multi-omic approach to understanding sex-based disparities in cancer prognosis.
Khan lab's study investigates the complex interplay between estrogen signaling (GPER1), asparagine synthetase (ASNS) expression, and the gut microbiome in tumor environments. To capture this, Can Akpinaroglu and the Khan Lab have established two parallel clinical cohorts. The retrospective arm has successfully accrued 300 stage III/IV CRC patients, utilizing Tissue Microarrays (TMAs) and Visium HD spatial transcriptomics to map the tumor microenvironment. Concurrently, the prospective arm tracks treatment-naive patients, utilizing Whole Genome Sequencing (WGS) and mass spectrometry on longitudinal stool and tissue samples to identify therapeutic resistance markers.
By correlating microbial taxa with tumor spatial heterogeneity, their research aims to identify novel, sex-specific therapeutic targets and stratify patients for precision oncology interventions.
- Photo by Yale Postgraduate Association
In February 2026, Can Akpınaroğlu, a Postgraduate Associate in Dr. Sajid Khan's lab within the Department of Surgery, presented their latest colorectal cancer research at the Yale Postgraduate Association (YPGA) Let’s Talk Research (LTR) seminar. His talk, titled "Integrated Spatial Transcriptomics, Tissue Micro-Array and Longitudinal Microbiome Profiling to Unravel Sex-Specific Asparagine Metabolism in Late-Stage Colorectal Cancer," showcased a groundbreaking multi-omic approach to understanding tumor growth.
During the presentation, Akpinaroglu detailed the lethal synergy between high GPER1 and ASNS expression, which drives aggressive tumor progression and disproportionately affects female patients. He also highlighted their highly ambitious methodology, which features a massive retrospective cohort of 2,000 patients utilizing high-resolution Visium HD spatial transcriptomics (WTA). This retrospective mapping is combined with an extensive prospective workflow tracking over 800 patients to map real-time, treatment-induced metabolic shifts. His presentation underscored the profound clinical impact of integrating spatial omics with longitudinal microbiome profiling to uncover novel, sex-specific therapeutic targets in advanced disease.
Group photo from the Yale Pharmacology Department Retreat 2025, held at the Mount Snow Grand Summit Resort in West Dover, Vermont. The retreat brought together faculty, postdocs, and students, including YSL Proteomics, for two days of presentations, poster sessions, and networking.
Group photo taken at the Yale Cancer Biology Institute Retreat 2024, held at Danford’s Hotel & Marina in Port Jefferson, New York. It was an inspiring two days of presentations, poster sessions, and networking, bringing together researchers across the Yale cancer biology community.
Can Akpınaroğlu presented YSL Proteomics' research on sample preparation workflows for DIA-MS analysis at the Yale Pharmacology Retreat in 2025. The poster detailed techniques including glycopeptide enrichment, in-solution and in-gel digestion, and protein precipitation strategies. It also highlighted key buffer formulations and chemical considerations in reduction and alkylation steps, along with detailed optimization of C18 protocols developed in Dr Yansheng Liu's lab.
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Surgical Oncology
300 George Street, Floor 6, 6103, Khan Lab.
New Haven, CT 06511
United States
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300 George Street
Lab
Fl 6th, Rm 6104
New Haven, CT 06511