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Pathology Grand Rounds Video March 5, 2026 - Jason L. Hornick, MD, PhD

March 09, 2026

Pathology Grand Rounds, March 5, 2026 - The William Barriss, Jr., Memorial Lecture, presented by Jason L. Hornick, MD, PhD, Professor of Pathology, Harvard Medical School.

ID
13925

Transcript

  • 00:00Good afternoon, everyone. Thank you
  • 00:02so much for coming.
  • 00:04Today is, our annual William
  • 00:07McAllister Junior,
  • 00:09Memorial Lecture.
  • 00:11And,
  • 00:12we are very
  • 00:13honored to have, doctor Jason
  • 00:15Hornick as,
  • 00:16a recipient of this lectureship
  • 00:18award.
  • 00:19Doctor Hornick is a professor
  • 00:21of pathology at Harvard Medical
  • 00:23School, and our cancer chair
  • 00:24at Brigham at Women's Hospital,
  • 00:27director of anatomic pathology and
  • 00:28immunohistochemistry
  • 00:29at Brigham and Women's Hospital,
  • 00:31and chief of soft tissue
  • 00:32and bone pathology at, Mass
  • 00:34General Brigham. So it's a
  • 00:36great honor,
  • 00:37to have doctor Hornick with
  • 00:38us today. And,
  • 00:40just a few words about
  • 00:41this lectureship,
  • 00:42and,
  • 00:43I have to tell to
  • 00:45to Jason, actually, our faculty
  • 00:47voted for you to receive
  • 00:48this lectureship award. It was
  • 00:50a nomination process, and it
  • 00:51was a vote. So it's
  • 00:53really, you know, we wanna
  • 00:54express how much we actually
  • 00:55appreciate what you did for
  • 00:57the field of surgical pathology.
  • 00:59But back to doctor McAllister,
  • 01:01who was
  • 01:02a graduate of Yale College
  • 01:04and John Hopkins Medical School
  • 01:06and Department of Pathology. He
  • 01:08actually came back to New
  • 01:09Haven
  • 01:10and served as the chief
  • 01:11of surgical pathology for the
  • 01:12new year,
  • 01:13for the New Haven, hospital
  • 01:15for twenty five years
  • 01:17from, nineteen fifty three to
  • 01:19nineteen seventy eight.
  • 01:21And,
  • 01:22he was diagnostic pathologist
  • 01:25educator,
  • 01:26and,
  • 01:27his teaching including the science
  • 01:28of medicine, also the art
  • 01:30of living. He was an
  • 01:31extraordinary
  • 01:32mentor, adviser,
  • 01:34friend to students, residents, coworkers,
  • 01:36and physicians from all discipline.
  • 01:38And I think this also
  • 01:39described doctor Jason Hornick. So,
  • 01:41I don't think doctor Jason
  • 01:42Hornick needs any introduction, but
  • 01:44just going to say a
  • 01:45few words about you.
  • 01:47Doctor Horney has started,
  • 01:49his,
  • 01:50medical school and completed his
  • 01:52medical training at University of
  • 01:54California, where she obtained his
  • 01:55MD and the PhD degree.
  • 01:57From West Coast to he
  • 01:59moved to East Coast to,
  • 02:00Harvard Medical School, where he
  • 02:03did a training in anatomic
  • 02:04pathology
  • 02:05and,
  • 02:06impressive fellowships in GYN, anatomic
  • 02:09pathology, soft tissue pathology, hematopathology,
  • 02:12and the gastrointestinal pathology.
  • 02:13I don't see, I don't
  • 02:14think we see that anymore.
  • 02:16So, he's, like, one of
  • 02:17the last, I would say,
  • 02:19pathologist who actually went through
  • 02:21such extensive training and is
  • 02:22actually able to do
  • 02:24ex excellent job in all
  • 02:25of the areas.
  • 02:27But what he is most
  • 02:28known for is certainly the
  • 02:29area of bone and soft
  • 02:30tissue pathology and GI as
  • 02:32well, but bone and soft
  • 02:33tissue in particular,
  • 02:34where he really defined multiple
  • 02:36entities and actually help us
  • 02:38to develop many diagnostic tests
  • 02:40that we routinely use. So
  • 02:41it's all thanks to you,
  • 02:42Jason. So thank you so
  • 02:43much.
  • 02:44Numerous publications needed to say
  • 02:46were five hundred. It's just
  • 02:48I I stopped counting, actually,
  • 02:50in your CV.
  • 02:51But, other notable,
  • 02:53contributions,
  • 02:54he's been, editor of the
  • 02:56WHO for the last three
  • 02:57editions,
  • 02:59and, he's currently serving as
  • 03:01the president of the United
  • 03:02States and the Canadian Academy
  • 03:04of Pathology
  • 03:05and is immediate past president
  • 03:07of the Arthur Purdes South
  • 03:08Society of Surgical Pathologists. So,
  • 03:10Jason, thank you so much
  • 03:12for, coming to us today
  • 03:13and accepting this Lectureship Award.
  • 03:15Thank you.
  • 03:20Thank you so much, Sonia.
  • 03:22And it's really such a
  • 03:23pleasure to be here back
  • 03:24at Yale.
  • 03:25And I very much appreciate
  • 03:26the faculty voting for me
  • 03:27to come.
  • 03:28I feel like I come
  • 03:29about every ten years. It's
  • 03:31been a while, but it's
  • 03:32so nice to be back.
  • 03:34I thought I'd come south
  • 03:35and the weather would be
  • 03:36amazing. But surprisingly, it's very
  • 03:38similar to Boston.
  • 03:40So, you know, throughout my
  • 03:42career and throughout my
  • 03:44kind of pathology years,
  • 03:46I've really had a big
  • 03:47interest in diagnostic immunistic chemistry.
  • 03:50In my PhD, I worked
  • 03:52on antibody engineering
  • 03:54where, I was working on
  • 03:55various constructs for tumor targeting
  • 03:58before we had drugs that
  • 03:59were antibodies, before Rituxan and
  • 04:01Herceptin,
  • 04:03and others.
  • 04:04And I knew nothing nothing
  • 04:05about pathology, but I knew
  • 04:06a lot about antibodies. So
  • 04:08it was sort of easy
  • 04:09to become
  • 04:11interested in immunohistochemistry.
  • 04:13And in this session, I'm
  • 04:14really gonna focus on how
  • 04:16immunohistochemistry
  • 04:17has changed over the last
  • 04:18twenty years.
  • 04:20I'm
  • 04:21I like to kind of
  • 04:23pretend there's a separation between
  • 04:24the twentieth century and twenty
  • 04:26first century.
  • 04:27It's not, of course, a
  • 04:28nice line there. But for
  • 04:29the first twenty five to
  • 04:30thirty years, we use this
  • 04:32technology
  • 04:34to try to define a
  • 04:35line of differentiation.
  • 04:37What do the tumor cells
  • 04:38most closely resemble? And this
  • 04:40still is critically important for
  • 04:42us in
  • 04:43oncologic surgical pathology and hematopathology.
  • 04:47But now we have so
  • 04:48many examples
  • 04:50of
  • 04:51using antibodies to recognize
  • 04:53the protein correlates of molecular
  • 04:55genetic alterations.
  • 04:57So this is really a
  • 04:59whole new way of using
  • 05:01this technology, and I know
  • 05:02there's many people here who
  • 05:03are expert in this field
  • 05:05as well.
  • 05:06But I'm really gonna talk
  • 05:08about molecular genetics, but only
  • 05:10as what the protein
  • 05:12surrogates are, the protein consequences
  • 05:15for immunoskemetry.
  • 05:17And,
  • 05:18you know, we still use
  • 05:19all the time so many
  • 05:21antibodies that are helpful to
  • 05:24to sub classify
  • 05:25tumors that we can't
  • 05:27diagnose down the microscope.
  • 05:29Undifferentiated
  • 05:30malignant neoplasms
  • 05:32or narrowing down various diagnostic
  • 05:34categories. But I'm not gonna
  • 05:36talk about this. I'm gonna
  • 05:37talk about what some people
  • 05:38have liked to call next
  • 05:40generation immunohistochemistry.
  • 05:42And I've listed six different
  • 05:44topics here, and I'm just
  • 05:46gonna give one or two
  • 05:47examples in each of these
  • 05:49areas
  • 05:50by way of introduction to
  • 05:51this field.
  • 05:52Some of you will be
  • 05:54familiar with some of these
  • 05:55antibodies, others will be new.
  • 05:57And all the antibodies I'm
  • 05:59talking about today are antibodies
  • 06:02we use routinely in our
  • 06:03clinical practice in my department.
  • 06:06And I'm not gonna read
  • 06:07this list because I'm gonna
  • 06:09give examples as we go
  • 06:10through them. But you can
  • 06:11see the really broad range
  • 06:13of applications
  • 06:14this has opened up for
  • 06:15us. In some cases, these
  • 06:17antibodies can really help narrow
  • 06:19down a differential diagnosis.
  • 06:21But in other cases,
  • 06:22they are perfect surrogates for
  • 06:24molecular genetics,
  • 06:26allowing us to perform a
  • 06:27single antibody test for immunohistochemistry
  • 06:30instead of any form of
  • 06:31molecular genetic testing. And this
  • 06:33is really valuable both for
  • 06:35the turnaround time, the expense,
  • 06:37and for practices throughout the
  • 06:39world that don't have access
  • 06:41to expensive next generation sequencing
  • 06:43and other technologies.
  • 06:45So that's in part been
  • 06:46one of my goals of
  • 06:48working in this field is
  • 06:49to make it easy
  • 06:50for pathologists to diagnose rare
  • 06:53cancers
  • 06:54in a very straightforward and
  • 06:55rapid fashion.
  • 06:57So probably the oldest example
  • 06:59I'm gonna talk about today
  • 07:00is an example where we
  • 07:02can look for abnormal protein
  • 07:04localization,
  • 07:05and that is for beta
  • 07:07catenin.
  • 07:08I'm sure you all know
  • 07:09about beta catenin, which is
  • 07:11the protein,
  • 07:12that is encoded by CTN
  • 07:14and B1 gene
  • 07:15involved along with the APC
  • 07:18protein
  • 07:19in the Wnt signaling pathway.
  • 07:22And mutations
  • 07:23in CTN and B1
  • 07:25or biallelic inactivation of the
  • 07:28adenomatous polyposis coli gene,
  • 07:31most often in patients who
  • 07:32have FAP, familial adenomatous polyposis,
  • 07:36results in an aberrant localization
  • 07:38of beta catenin
  • 07:40from the cell membrane
  • 07:41inside the cell to the
  • 07:43cytoplasm and the nucleus.
  • 07:45This is very helpful
  • 07:47to support the diagnosis
  • 07:49of a select
  • 07:50group of tumor types
  • 07:52that have mutations
  • 07:54in one of these genes.
  • 07:55And I've listed them here
  • 07:57on this
  • 07:58slide. And I'm just gonna
  • 08:00show you two examples.
  • 08:01So the first, a very
  • 08:03old example.
  • 08:04In nineteen ninety nine, it
  • 08:05was discovered
  • 08:07that beta catenin mutations
  • 08:09are the most common drivers
  • 08:12of desmoid fibromatosis.
  • 08:14You know, so called deep
  • 08:15fibromatosis
  • 08:16that's a locally aggressive soft
  • 08:18tissue tumor that arises fairly
  • 08:20commonly,
  • 08:22extra abdominal sites in the
  • 08:23abdominal cavity.
  • 08:25And, Liz Montgomery and colleagues
  • 08:27showed us,
  • 08:29twenty years ago now that
  • 08:30we could use immunohistochemistry
  • 08:33to look for aberrant localization
  • 08:35of this protein as a
  • 08:36very good diagnostic surrogate.
  • 08:39It's not perfect. It's only
  • 08:41about eighty percent
  • 08:43sensitive for desmoid fibromatosis.
  • 08:46So but fortunately it's negative
  • 08:48in many other tumors we
  • 08:49would consider
  • 08:50in the differential diagnosis.
  • 08:53But because specificity and sensitivity
  • 08:55are not perfect,
  • 08:57it must be interpreted in
  • 08:58the context of morphology
  • 09:00and clinical
  • 09:02details.
  • 09:03And at the same time,
  • 09:05the lack of this pattern
  • 09:06certainly does not preclude diagnosis.
  • 09:09But this is great when
  • 09:10you're dealing with a small
  • 09:11core biopsy
  • 09:12and you're feeling a little
  • 09:13bit uncomfortable to make a
  • 09:15firm diagnosis of this tumor,
  • 09:17which obviously has very huge
  • 09:19implications
  • 09:20for management of the patient.
  • 09:22So this is desmoid fibromatosis.
  • 09:25This tumor is composed of
  • 09:26these bland,
  • 09:28uniform
  • 09:28myofibroblastic
  • 09:30spindle cells with
  • 09:31tapering nuclei and indistinct cytoplasm
  • 09:35arranged in long sweeping fascicles
  • 09:37within a often collagenous stroma.
  • 09:40One of the clues to
  • 09:41the diagnosis is the presence
  • 09:43of these
  • 09:44relatively thick walled muscularized
  • 09:47vessels
  • 09:48that have variable perivascular
  • 09:50edema between the bundles of
  • 09:52spindle cells.
  • 09:54And this is beta catenin.
  • 09:55We get again, aberrant nuclear
  • 09:57localization
  • 09:59as a very helpful finding
  • 10:01to diagnose desmoid fibromatosis.
  • 10:04One other example is a
  • 10:06tumor type that arises in
  • 10:07the, sino nasal region that's
  • 10:10called glomangio pericytoma.
  • 10:12We used to refer to
  • 10:13it as sino nasal hemangioparicytoma.
  • 10:17This is a lesion that
  • 10:18presents as a polypoid mass,
  • 10:20most often in the ethmoid
  • 10:21sinus or the nasal cavity.
  • 10:24It can recur locally, but
  • 10:25it's entirely benign. So certainly
  • 10:27you don't wanna mistake this
  • 10:28tumor for a sarcoma.
  • 10:30This is a true tumor
  • 10:32of perivascular
  • 10:33contractile cells or pericytes,
  • 10:36and it often
  • 10:37expresses actin filaments.
  • 10:40This is how they look.
  • 10:41They often have these thin
  • 10:43walled branching blood vessels.
  • 10:45As you see in the
  • 10:45middle of the field,
  • 10:47the tumor cells are these
  • 10:48very uniform and evenly distributed
  • 10:51oval cells
  • 10:52with very fine chromatin.
  • 10:56In twenty fifteen,
  • 10:58two groups simultaneously
  • 11:00discovered
  • 11:01that sino nasal glomangioparicitoma
  • 11:05harbors
  • 11:06activating mutations in beta catenin
  • 11:08and CTN and B1,
  • 11:10just like desmoid fibromatosis.
  • 11:12And all of a sudden
  • 11:13it became very easy
  • 11:15to confirm the diagnosis with
  • 11:17a single antibody.
  • 11:19And it's much more impressive
  • 11:21than desmoid tumors
  • 11:22where you'll have really intense
  • 11:25nuclear and cytoplasmic
  • 11:26staining
  • 11:27and essentially one hundred percent
  • 11:28of the tumors of this
  • 11:29class.
  • 11:30So this is the way
  • 11:32we now diagnose
  • 11:33this uncommon tumor type.
  • 11:37So moving on to cert
  • 11:39looking for protein loss
  • 11:41due to inactivation of tumor
  • 11:43suppressor genes.
  • 11:44This is not a complete
  • 11:45list. There are many examples.
  • 11:47You know, TP53
  • 11:49obviously is an example we've
  • 11:50known about for decades.
  • 11:52That's a little bit different
  • 11:54because of stabilization of the
  • 11:55protein. We often get what
  • 11:57looks like overexpression,
  • 11:59but sometimes when you have
  • 12:00truncating mutations,
  • 12:02you do get a complete
  • 12:03loss of the protein.
  • 12:05But here's examples where we
  • 12:06do find consistent complete loss.
  • 12:09And again, I'm just gonna
  • 12:10give you two examples.
  • 12:12The first,
  • 12:13example is BAP1.
  • 12:15This is a nuclear deubiquitinase
  • 12:18that was found in twenty
  • 12:20eleven
  • 12:21to be inactivated
  • 12:23in the vast majority
  • 12:25of pleural diffuse mesotheliomas,
  • 12:29both in the sporadic setting
  • 12:31and in patients who have
  • 12:32germline mutations
  • 12:34in BAP1, which is a
  • 12:35very uncommon
  • 12:37cancer predisposition
  • 12:38syndrome.
  • 12:40And since then, several groups,
  • 12:42one of the first was
  • 12:43led by Andy Cherg from
  • 12:45Vancouver in Canada,
  • 12:47showed us how we can
  • 12:48use this antibody
  • 12:49as a very helpful marker
  • 12:51to diagnose mesothelioma
  • 12:53when we don't have very
  • 12:55clear invasion
  • 12:57of adipose tissue of the
  • 12:58parietal pleura and other structures.
  • 13:01And those of you who
  • 13:01work in surgical pathology know
  • 13:04that that's really what you
  • 13:05need to diagnose malignancy
  • 13:08in atypical mesothelial
  • 13:09proliferations.
  • 13:12The BAP1 tumor predisposition
  • 13:14syndrome
  • 13:16predisposes
  • 13:16not only to the development
  • 13:18of mesothelioma,
  • 13:20but to a range of
  • 13:21very unusual melanocytic tumors,
  • 13:23as well as renal cell
  • 13:25carcinoma.
  • 13:26And the sporadic counterparts of
  • 13:28all these tumors
  • 13:29can also harbor mutations,
  • 13:31that are somatic.
  • 13:35So this was a case
  • 13:36I had a couple of
  • 13:37years ago, which is a
  • 13:38really nice illustration of this,
  • 13:40finding.
  • 13:41This was a patient who
  • 13:42was,
  • 13:43a seventy five year old
  • 13:44man who had
  • 13:46a plural effusion. Going like
  • 13:48two thousand two thousand two
  • 13:49thousand. Now it's just like
  • 13:51we kind of We have
  • 13:53can can someone please mute?
  • 13:54Yeah. Two thousand total over
  • 13:56four years. So with Someone
  • 13:58help me mute them? Maybe
  • 13:59not.
  • 14:00Oh, well.
  • 14:03And when the surgeon went
  • 14:05in to look into the
  • 14:06pleural cavity,
  • 14:08she saw nothing abnormal. So
  • 14:10she took these arbitrary biopsies
  • 14:12all over the parietal pleura,
  • 14:14and this was the only
  • 14:15biopsy that had abnormality. You
  • 14:17can see we have these
  • 14:19uniform mildly atypical epithelioid
  • 14:22cells,
  • 14:23whether they're barely trickling into
  • 14:25the fat,
  • 14:26which would be how we
  • 14:27would confirm the diagnosis of
  • 14:29mesothelioma.
  • 14:30But if this is all
  • 14:31you get, it's a little
  • 14:32bit scary to diagnose this
  • 14:35almost uniformly fatal tumor. So
  • 14:37let's look at BAP1 immunoscedochemistry.
  • 14:40This was such a nice
  • 14:41example. You can see the
  • 14:42normal mesothelium
  • 14:43on the upper and lower
  • 14:45parts of the image on
  • 14:46the right. And then we
  • 14:47have the neoplasia in the
  • 14:49middle
  • 14:49and you see this really
  • 14:51beautiful transition
  • 14:52between normal nuclear staining
  • 14:55and tumor cells that have
  • 14:56a complete loss of BAP1.
  • 14:58So this is a beautiful
  • 14:59surrogate
  • 15:00for biallelic inactivation of the
  • 15:02BAP1 gene.
  • 15:04And, my colleague, Lynette Scholl,
  • 15:06along with David Chaple, who's
  • 15:08now,
  • 15:09works on faculty at the
  • 15:10University of Michigan,
  • 15:12evaluated a panel of different,
  • 15:15antibodies that recognize,
  • 15:17protein products of tumor suppressors
  • 15:20and found that the combination
  • 15:22not only of BAP1, but
  • 15:23also of MTAP
  • 15:24and Merlin, the NF2 gene
  • 15:27protein product
  • 15:28together can be very helpful
  • 15:30to diagnose
  • 15:31mesothelioma.
  • 15:32And this has become a
  • 15:33routine part of our diagnostic
  • 15:35practice.
  • 15:37One other marker I'm gonna
  • 15:39mention is a tumor suppressor
  • 15:41that is
  • 15:42inactivated
  • 15:43in a very rare aggressive
  • 15:45cancer
  • 15:46that occurs predominantly in the
  • 15:47ovary of adolescent girls and
  • 15:50young women
  • 15:51that goes by this very
  • 15:52long name, small cell carcinoma
  • 15:54of the ovary
  • 15:55of hypercalcemic
  • 15:56type.
  • 15:57It's a it's a long
  • 15:58descriptive name. We often call
  • 16:00it SCUT because it's easier
  • 16:02than saying all these words.
  • 16:04And we call it this
  • 16:05name because in about two
  • 16:06thirds of cases,
  • 16:08patients present with quite profound
  • 16:10hypercalcemia.
  • 16:12And even with early stage
  • 16:14disease localized to the ovary,
  • 16:16their survival is very poor
  • 16:18for this aggressive cancer type.
  • 16:21Many cases have focal areas
  • 16:23with these dilated follicle like
  • 16:25spaces.
  • 16:26That's very characteristic of this
  • 16:28aggressive tumor
  • 16:29and we call it small
  • 16:30cell because most examples
  • 16:33are dominated by fairly uniform
  • 16:35small round blue cells with
  • 16:36a little bit of cytoplasm.
  • 16:38This is not really a
  • 16:40small cell carcinoma as you
  • 16:41think of small cell carcinomas
  • 16:43of any other site.
  • 16:45In fact, some people have
  • 16:46proposed this is probably better
  • 16:48aligned with a sarcoma,
  • 16:49but we still call it
  • 16:50this long descriptive name.
  • 16:52In about fifty percent of
  • 16:54cases,
  • 16:55there is a large cell
  • 16:56component
  • 16:57which often has rhabdoid cytoplasmic
  • 17:00inclusions,
  • 17:01which are these intermediate
  • 17:03filament containing
  • 17:04perinuclear
  • 17:05inclusions that look all hyaline.
  • 17:07And that's looks very similar
  • 17:09to malignant rhabdoid tumors of
  • 17:11the of infancy.
  • 17:14And again, we have multiple
  • 17:16groups that essentially at the
  • 17:17same time published in the
  • 17:19same issue
  • 17:20of Nature Genetics discovered
  • 17:22that inactivating
  • 17:23mutations in SMARCA4,
  • 17:25which encodes a protein that's
  • 17:27also called BRG1,
  • 17:29are the defining genomic feature
  • 17:31of this aggressive cancer type.
  • 17:33And otherwise, they have a
  • 17:35very
  • 17:35flat genome. It's really a
  • 17:37this isolated event
  • 17:39can lead to this incredibly
  • 17:41aggressive cancer type. And in
  • 17:43fact,
  • 17:44in about
  • 17:45fifty percent of patients,
  • 17:47even without a family history,
  • 17:49they will be found to
  • 17:50have a germline mutation. So
  • 17:51the penetrance is quite variable.
  • 17:54But this has now become
  • 17:55an easy way to diagnose
  • 17:57this rare cancer.
  • 17:58We no longer have to
  • 17:59send it to an expert
  • 18:01to help us decide that
  • 18:02this is in fact one
  • 18:03of these rare cancers.
  • 18:07And just like we saw,
  • 18:08in BAP1,
  • 18:10we have a complete loss
  • 18:11of the normal nuclear
  • 18:13reactivities
  • 18:14for SMARCA4 or BRG1,
  • 18:16and this is found in
  • 18:18almost a hundred percent
  • 18:19of tumors of this class.
  • 18:23One example of a really
  • 18:24nice epigenetic
  • 18:25alteration we can assess for
  • 18:27by immunoskemetry,
  • 18:28and I talked about this
  • 18:29with the trainees this morning,
  • 18:31is a malignant peripheral nerve
  • 18:33sheath tumor.
  • 18:34As many of you know,
  • 18:35about fifty percent
  • 18:37of MPNSTs
  • 18:38arise in patients with NF
  • 18:40one,
  • 18:41forty percent are sporadic,
  • 18:43and ten percent arise following
  • 18:45therapeutic radiation therapy.
  • 18:47If you have a malignant
  • 18:49spindle cell neoplasm
  • 18:51in a patient with NF1
  • 18:54or arising from a large
  • 18:55nerve
  • 18:56or coming out of a
  • 18:57benign neurofibroma,
  • 18:58the diagnosis is pretty easy.
  • 19:00But outside of those associations,
  • 19:03this is a really difficult
  • 19:04diagnosis,
  • 19:06especially because
  • 19:08our markers of nerve sheath
  • 19:09differentiation,
  • 19:11the Schwann cell markers S100
  • 19:13and Sox10,
  • 19:14are only positive in just
  • 19:16under half of the cases,
  • 19:18and they're focal and weak
  • 19:19and unimpressive when they are
  • 19:21positive.
  • 19:21So it really relies
  • 19:23on,
  • 19:24excluding other tumors you might
  • 19:26consider in the differential diagnosis
  • 19:29and pay paying close attention
  • 19:31to the often very distinctive
  • 19:33histology.
  • 19:35Many examples of malignant peripheral
  • 19:37nerve sheath tumor
  • 19:38have these abrupt transitions
  • 19:41between very highly cellular fascicular
  • 19:44areas
  • 19:45and slightly less cellular areas
  • 19:47with a scant myxoid stroma,
  • 19:49typically with this perivascular
  • 19:52hypercellularity
  • 19:53or condensation
  • 19:54of the cells
  • 19:55around the blood vessels.
  • 19:57And if you see classic
  • 19:58histology, that can be very
  • 20:00helpful,
  • 20:00but many cases don't look
  • 20:02as good as this.
  • 20:05Mentioning another chromatin remodeling complex,
  • 20:08this is the polychrome repressive
  • 20:10complex two.
  • 20:12PRC two has multiple subunits,
  • 20:14as you can see in
  • 20:15this this nice diagram,
  • 20:17including SUS12 and EED.
  • 20:20And
  • 20:20we've known for quite some
  • 20:22time
  • 20:23that this complex
  • 20:25is a methylating enzyme that's
  • 20:27recruited to chromatin
  • 20:29to trimethylate
  • 20:30histone h three
  • 20:32at the lysine twenty seven
  • 20:33residue.
  • 20:35And we call that moiety
  • 20:37h three k twenty seven
  • 20:39m e three.
  • 20:40And if you say it
  • 20:41under your breath a few
  • 20:42times, you'll learn to repeat
  • 20:44it very easily.
  • 20:45H three k twenty seven
  • 20:47m e three,
  • 20:48and now you know my
  • 20:49iPhone password.
  • 20:52So this modification
  • 20:54is a way that we
  • 20:55kinda keep our transcription in
  • 20:57check,
  • 20:57but modifications or dysregulation
  • 21:00can lead to cancer of
  • 21:02various types.
  • 21:03And in two thousand fourteen,
  • 21:05several groups discovered
  • 21:07that mutations
  • 21:09in one of the genes
  • 21:10that encodes PRC2
  • 21:13are found in most examples
  • 21:16of high grade malignant peripheral
  • 21:17nerve sheath tumor.
  • 21:19And these alterations
  • 21:21either in SUS12
  • 21:22most often or sometimes an
  • 21:24EED
  • 21:25lead
  • 21:26to inactivation
  • 21:27of the enzyme.
  • 21:29So PRC2
  • 21:30can no longer trimethylt histone
  • 21:32three
  • 21:33at lysine twenty seven.
  • 21:35And remarkably, there were already
  • 21:37commercial antibodies available
  • 21:39that only recognized histone three
  • 21:42when it has
  • 21:43lysine twenty seven trimethylation.
  • 21:45So we're looking for loss
  • 21:47of this normal trimethylation mark
  • 21:50by immunoskechemistry.
  • 21:51And this works best
  • 21:53in intermediate to high grade
  • 21:55examples, which are the ones
  • 21:56we encounter most often
  • 21:58in the sporadic setting in
  • 21:59our clinical practice and surgical
  • 22:01pathology.
  • 22:02In low grade MPNST, we're
  • 22:04really trying to decide is
  • 22:05it malignant
  • 22:06in a patient with NF1
  • 22:07who's gets a atypical neurofibroma
  • 22:10in transformation.
  • 22:11We're not trying to decide
  • 22:12is it a nerve sheath
  • 22:13tumor.
  • 22:15The specificity
  • 22:16is also excellent.
  • 22:18Almost all the tumors you
  • 22:19would consider in the differential
  • 22:20diagnosis
  • 22:22show consistent
  • 22:23normal
  • 22:24staining with this antibody.
  • 22:26The only two exceptions are
  • 22:28dedifferentiated liposarcoma
  • 22:32melanoma. That's a very small
  • 22:34percentage.
  • 22:35As you many of you
  • 22:36know, Ddiff liposarq has MDM
  • 22:38two amplification.
  • 22:39So that's an easy way
  • 22:41to make that diagnosis.
  • 22:42And spindle cell melanomas arise
  • 22:44in the skin. They spread
  • 22:45to lymph nodes.
  • 22:47They're strongly and diffusely SOX10
  • 22:49and S100 positive in most
  • 22:50cases. So it's usually not
  • 22:52really a problem
  • 22:53in differential diagnosis for a
  • 22:55deep
  • 22:56seated malignant spindle cell neoplasm
  • 22:58with limited or no
  • 23:00Sox ten expression.
  • 23:01So this is what it
  • 23:02looks like. It looks just
  • 23:03like a tumor suppressor protein
  • 23:05loss, but we're looking for
  • 23:07we're seeing a loss of
  • 23:08the trimethyl mark. And it
  • 23:10works beautifully. We now use
  • 23:12this daily in my practice,
  • 23:14in our laboratory.
  • 23:15And this was a case
  • 23:16that would be impossible to
  • 23:18recognize.
  • 23:19It just looks like a
  • 23:20fibrosarcoma
  • 23:21like
  • 23:22fascicular spindle cell malignant neoplasm,
  • 23:25but we know this is
  • 23:26MPNST because it arose in
  • 23:27a patient with NF one.
  • 23:30And one of the tumors
  • 23:31that is most difficult to
  • 23:33distinguish is synovial sarcoma.
  • 23:35These tumors have normal staining
  • 23:38for the trinephile antibody.
  • 23:45So now we're gonna shift
  • 23:46and talk a little bit
  • 23:48about
  • 23:49looking for protein correlates of
  • 23:51gene fusions
  • 23:53as predictive testing for targeted
  • 23:55therapies.
  • 23:56You all know about ALK.
  • 23:58This is a very
  • 24:00exciting topic in
  • 24:02oncology, medical oncology,
  • 24:04and ROS1, which is a
  • 24:05very similar receptor tyrosine kinase
  • 24:08gene.
  • 24:09And about four percent of
  • 24:11lung adenocarcinomas
  • 24:12have gene fusions involving ALK.
  • 24:14One percent have ROS1 fusions.
  • 24:17And these alterations are much
  • 24:18more common in inflammatory
  • 24:20myofibroblastic
  • 24:21tumors,
  • 24:23within which they were identified
  • 24:25before they were in lung
  • 24:26cancer.
  • 24:28This
  • 24:30gene was named after
  • 24:32lymphoma, as you all know.
  • 24:34This is the anaplastic lymphoma
  • 24:36kinase.
  • 24:37Way back in nineteen ninety
  • 24:39four,
  • 24:40Morris and Look
  • 24:41discovered
  • 24:42that ALK fusions
  • 24:44are a very common driver
  • 24:46in a very uncommon
  • 24:48aggressive
  • 24:50t cell non Hodgkin lymphoma
  • 24:52that's now called anaplastic large
  • 24:54cell lymphoma,
  • 24:55ALK rearranged.
  • 24:57It was two thousand and
  • 24:58seven that Souda and colleagues
  • 25:00from Japan
  • 25:01discovered the first gene fusions
  • 25:03in lung cancer involving ALK.
  • 25:05This was the EML4 ALK
  • 25:07fusion.
  • 25:08Many of these cases are
  • 25:09mucinous
  • 25:11or poorly differentiated
  • 25:12adenocarcinomas
  • 25:13with a signet ring cell
  • 25:15component, although not invariably. They
  • 25:17can have a range
  • 25:18of histology within the spectrum
  • 25:20of adenocarcinomas.
  • 25:23And then remarkably, in only
  • 25:24three years between that publication
  • 25:27and the publication of this
  • 25:28first phase one clinical trial,
  • 25:31this group,
  • 25:33predominantly from Massachusetts General Hospital
  • 25:35in Boston,
  • 25:36showed us that we can
  • 25:38target,
  • 25:39this
  • 25:40fusion
  • 25:41in advanced lung adenocarcinomas
  • 25:44with ALK gene rearrangements
  • 25:46as a very effective way
  • 25:47of treating these unfortunate patients.
  • 25:50And I just have to
  • 25:51give a shout out to
  • 25:52my friend, John Iefrady.
  • 25:53The senior author is a
  • 25:55molecular pathologist.
  • 25:57I actually trained him in
  • 25:58surgical pathology. He was a
  • 25:59first year when I was
  • 26:00a second year. John likes
  • 26:01to say it didn't take
  • 26:02because he doesn't do surgical
  • 26:04pathology,
  • 26:05but he's a brilliant molecular
  • 26:06pathologist who actually developed Archer
  • 26:09in his research lab,
  • 26:11and he was a senior
  • 26:12in this paper.
  • 26:14And you can see from
  • 26:15the waterfall plot, this had
  • 26:17really dramatic benefit to these
  • 26:18patients.
  • 26:19I'm sure many of you
  • 26:20know that crizotinib
  • 26:21alone doesn't last very long.
  • 26:24Patients develop secondary resistance mutations
  • 26:27within the kinase domain of
  • 26:29ALK, but now we have
  • 26:30many different
  • 26:31targeted therapeutics,
  • 26:33second, third, fourth generation,
  • 26:35and this has really transformed
  • 26:37thoracic oncology practice, not only
  • 26:39against ALK, but against ROS1
  • 26:42and many other,
  • 26:43kinase alterations.
  • 26:47Beyond the tumors I've mentioned,
  • 26:48we now know that ALK
  • 26:49fusions are found in a
  • 26:50wide range of tumor types.
  • 26:53Some are highly aggressive,
  • 26:54Some of them are usually
  • 26:56indolent, and some of them
  • 26:58are entirely benign.
  • 26:59Even in these very trivial
  • 27:01benign skin tumors that we
  • 27:03call
  • 27:04epithelioid
  • 27:05fibrocystiocytomas.
  • 27:06And they can have the
  • 27:07exact same fusions
  • 27:09as highly aggressive cancers.
  • 27:13The ALK fusion partner sometimes
  • 27:15results in a distinctive pattern
  • 27:18by immunohistochemistry
  • 27:19down the microscope, which is
  • 27:20really quite amazing.
  • 27:22The most common fusion in
  • 27:24anaplastic large cell lymphoma with
  • 27:26nucleophosmin
  • 27:27results in this combined
  • 27:29cytoplasmic
  • 27:30and nuclear pattern.
  • 27:32There's a very distinctive pattern
  • 27:34we see in an aggressive
  • 27:36variant of inflammatory
  • 27:38myofibroblastic
  • 27:39tumor
  • 27:40that's called epithelioid
  • 27:42inflammatory
  • 27:43myofibroblastic
  • 27:44sarcoma,
  • 27:45and that is a nuclear
  • 27:46membrane pattern of ALK.
  • 27:48And this is all based
  • 27:49on what the fusion partner
  • 27:51is. Many of the other
  • 27:52fusions result in a cytoplasmic
  • 27:55pattern of staining.
  • 27:57This is ALCL with nucleophosmin.
  • 27:59You can see that kind
  • 28:00of complex pattern of localization
  • 28:03within the cells.
  • 28:05This is lung adenocarcinoma
  • 28:07with EML4 ALK fusion, a
  • 28:09granular
  • 28:10pattern of cytoplasmic staining.
  • 28:12And this is that aggressive
  • 28:13variant of IMT
  • 28:15where the Ran binding protein
  • 28:18two fusion
  • 28:19brings ALK to the nuclear
  • 28:21pore complex
  • 28:22and it looks like this
  • 28:23really distinctive, beautiful
  • 28:25nuclear membrane pattern.
  • 28:29For clinical practice, it's also
  • 28:31very important to know that
  • 28:33which antibody
  • 28:34clone you're using is important
  • 28:37in terms of what you're
  • 28:38using the application for. The
  • 28:40ALK one clone we've had
  • 28:42for more than thirty years,
  • 28:43and it works beautifully
  • 28:45for lymphoma diagnosis,
  • 28:47but it's rather insensitive. It's
  • 28:49not a very,
  • 28:50powerful antibody
  • 28:52and
  • 28:53lung adenocarcinomas
  • 28:55with ALK fusions actually have
  • 28:56a pretty low level of
  • 28:57protein expression.
  • 28:59So ALK one is usually
  • 29:01negative, and it doesn't help
  • 29:02you as a screen for
  • 29:04EML four or other ALK
  • 29:06gene fusions.
  • 29:08In contrast,
  • 29:09in the last ten years
  • 29:10or so, there have been
  • 29:11two
  • 29:12highly sensitive anti ALK antibodies
  • 29:15developed,
  • 29:16which are beautiful surrogates for
  • 29:17the fusions.
  • 29:19And now they can be
  • 29:20used as a standalone test
  • 29:22to identify what patients with
  • 29:24lung adenocarcinoma
  • 29:26can be treated with targeted
  • 29:28therapies.
  • 29:30Inflammatory
  • 29:31myofibroblastic
  • 29:32tumors are kind of in
  • 29:33the middle. The level of
  • 29:34expression is usually
  • 29:36sufficient
  • 29:37for ALK1 to detect the
  • 29:39ALK in IMTs,
  • 29:41but you'll miss about five
  • 29:42percent of cases that way.
  • 29:44The newer antibodies, you'll pick
  • 29:46up all the ALK fusions.
  • 29:49And we were very lucky.
  • 29:50We were able to piggyback
  • 29:52along with that really
  • 29:53fundamental,
  • 29:55like
  • 29:56practice changing paper on lung
  • 29:58adenocarcinoma
  • 29:59with crizotinib
  • 30:01that I mentioned.
  • 30:02Because of that paper, we
  • 30:03could publish a case report,
  • 30:05snuck into the same issue
  • 30:07of the New England Journal
  • 30:08of Medicine,
  • 30:09the first patient with one
  • 30:10of these aggressive variants of
  • 30:12IMT
  • 30:13who had a really dramatic
  • 30:15response to crizotinib.
  • 30:16And this was from this
  • 30:18study.
  • 30:19My former colleague, James Butrinsky,
  • 30:22who's a medical oncologist specializing
  • 30:25in sarcoma,
  • 30:26treated this patient
  • 30:27who had a pelvic
  • 30:29epithelioid inflammatory myofibroblastic
  • 30:32sarcoma.
  • 30:33It recurred locally with multifocal
  • 30:35disease, including
  • 30:37a metastasis of the liver.
  • 30:39The patient went on therapy.
  • 30:40After three months, there was
  • 30:41a dramatic partial response.
  • 30:43Then a surgical oncologist
  • 30:46by the name of Monica
  • 30:47Bertinoli,
  • 30:48who actually moved on to
  • 30:49become the head of the
  • 30:50NCI,
  • 30:51and then she was the
  • 30:52head of the NIH.
  • 30:53So my claim to fame
  • 30:54is I briefly worked with
  • 30:55Monica, who's a brilliant
  • 30:57scientist
  • 30:58and a
  • 31:00surgical oncologist.
  • 31:01She did debulking of this
  • 31:03patient,
  • 31:03and he survived for more
  • 31:05than ten years on oral
  • 31:06crizotinib therapy after this. So
  • 31:08this is not only transformative
  • 31:10for patients with carcinomas,
  • 31:12but there are some
  • 31:15aggressive
  • 31:16mesenchymal tumors
  • 31:17that are targetable because of
  • 31:19these alterations.
  • 31:22And just a few words
  • 31:23about ROS1. So this is
  • 31:24ROS1 immunohistochemistry
  • 31:26in one of the lung
  • 31:27adenocarcinomas
  • 31:28with a ROS1 fusion.
  • 31:30But unfortunately, the antibody we
  • 31:32have against ROS1
  • 31:34is highly sensitive,
  • 31:36but the specificity
  • 31:37is less than the ones
  • 31:40against ALK.
  • 31:42So it's a very good
  • 31:43screen,
  • 31:44but we can't use it
  • 31:45as a standalone predictive test
  • 31:47for lung adenocarcinoma.
  • 31:49So in our practice, we
  • 31:50do run ALK and ROS1
  • 31:52as routine
  • 31:54screening for lung adenocarcinomas.
  • 31:56If ALK is positive, that's
  • 31:58enough information for treatment.
  • 32:00But ROS1 requires
  • 32:01confirmation
  • 32:03by gene fusion testing or
  • 32:05FISH.
  • 32:08One other example I'm just
  • 32:09gonna mention because it's been
  • 32:10such a hot topic in
  • 32:12oncology
  • 32:13and that's NTRK, which I'm
  • 32:14sure many of you know
  • 32:15about.
  • 32:16Three different NTRK genes result
  • 32:18in three different proteins.
  • 32:20One, two, and three becomes
  • 32:22A, B, and C. And
  • 32:23we have antibodies available
  • 32:25that recognize a conserved sequence
  • 32:28in all three of these
  • 32:30Turk proteins.
  • 32:31It's a very nice antibody.
  • 32:33And why do we care
  • 32:34about NTRK? Because very similar
  • 32:36to what we saw in
  • 32:38ALK prearranged lung cancers,
  • 32:41NTRK,
  • 32:42tumors with NTRK fusions that
  • 32:44are very aggressive
  • 32:46can be effectively treated
  • 32:48with larotrectinib
  • 32:49and other NTRK inhibitors. And
  • 32:51in fact, in this first
  • 32:53paper that was published almost
  • 32:55eight years ago now,
  • 32:57the waterfall plot looks even
  • 32:58better than crizotinib,
  • 33:00And as you'll notice from
  • 33:01the top of this graph,
  • 33:03this was agnostic to tumor
  • 33:05type. So we had carcinomas,
  • 33:08GIST,
  • 33:10salivary gland tumors,
  • 33:11melanoma,
  • 33:13all a couple of sarcomas.
  • 33:16Irrespective of the tumor type.
  • 33:18If it was metastatic
  • 33:20malignancy with an NTRK fusion,
  • 33:22they had really good responses
  • 33:24in most cases.
  • 33:26The antibody works really well
  • 33:28to identify tumors that are
  • 33:30defined by NTRK fusions.
  • 33:33For example, in
  • 33:35infantile fibrosarcoma,
  • 33:37this antibody, the Pentract antibodies
  • 33:40become a very easy way
  • 33:41to make the diagnosis.
  • 33:43The same thing goes for
  • 33:44secretory carcinomas of the breast
  • 33:46or salivary gland or rarely
  • 33:48in skin and other sites.
  • 33:50These have,
  • 33:51NTRK fusions as a defining
  • 33:53feature and immunohistochemistry
  • 33:55works beautifully. You see the
  • 33:57nuclear staining
  • 33:58in these secretory
  • 33:59carcinomas.
  • 34:01And several groups have actually
  • 34:03evaluated,
  • 34:05PennTrak immunostochemistry
  • 34:07as a surrogate for NTRK
  • 34:08fusions
  • 34:09in tumor types where the
  • 34:11NTRK rearrangements
  • 34:12are much less common.
  • 34:14And as I'll show you
  • 34:15in a minute, sometimes these
  • 34:16are very, very rare events.
  • 34:18Many of these were led
  • 34:19by Jacqueline Heckman from New
  • 34:21York.
  • 34:22Really beautiful papers,
  • 34:24trying to decide
  • 34:25whether we could use the
  • 34:27antibody as a surrogate.
  • 34:29And as you see from
  • 34:30the left side of this
  • 34:31panel,
  • 34:32unfortunately,
  • 34:33in many cancers that are
  • 34:34much more common,
  • 34:35the fusions are really rare,
  • 34:38zero point one percent, zero
  • 34:39point three percent of tumors.
  • 34:42And Lynette and I did
  • 34:43this
  • 34:44prospective,
  • 34:45very small screening study a
  • 34:47couple of years ago
  • 34:48just to kind of test
  • 34:49out this hypothesis.
  • 34:51We were using all the
  • 34:52cases for which we were
  • 34:53already doing
  • 34:55testing for lung cancer,
  • 34:57endometrial
  • 34:58cancer, colon cancer for MMR,
  • 35:00and we used one antibody
  • 35:02to do a pen track
  • 35:03over the course of, like,
  • 35:04six months. And we found
  • 35:06that four out of almost
  • 35:08five hundred cases were positive.
  • 35:10But by testing, only one
  • 35:12of these had an NTRK
  • 35:13fusion.
  • 35:14So clearly, this is not
  • 35:15a great method to screen,
  • 35:17and it probably is not
  • 35:18gonna solve
  • 35:19the problem to identify these
  • 35:21very rare NTRK rearranged aggressive
  • 35:24cancers.
  • 35:25And if you look at
  • 35:26this other study by Rosen
  • 35:28from Clinical Cancer Research
  • 35:30from twenty twenty,
  • 35:32you see that the sensitivity
  • 35:33and specificity
  • 35:34are imperfect.
  • 35:35And that's really the problem.
  • 35:37The sensitivity
  • 35:38for NTRK3 is almost eighty
  • 35:40percent, so you're gonna miss
  • 35:42twenty percent of cases.
  • 35:44And at the same time,
  • 35:46the specificity overall is only
  • 35:48about eighty percent.
  • 35:49So, unfortunately, it looks like
  • 35:51immuno stick chemistry doesn't save
  • 35:52us as a screen for
  • 35:54these patients and you really
  • 35:55have to do
  • 35:56fusion testing, which obviously in,
  • 35:59resource poor settings, is it
  • 36:01possible?
  • 36:01So it's still a problem
  • 36:03that we're trying to, figure
  • 36:04out.
  • 36:07Next, I'm going to show
  • 36:08you a couple of really
  • 36:09nice examples of mutant oncoprotein
  • 36:12specific antibodies.
  • 36:13We've had these for many
  • 36:15years. Some of them are
  • 36:16newer and some are older.
  • 36:20I suspect many of you
  • 36:21know about the IDH1
  • 36:23R132H
  • 36:25mutation specific antibody.
  • 36:27This has become routine practice
  • 36:29for diagnosis of gliomas.
  • 36:31It's really a remarkably
  • 36:33powerful way
  • 36:35for classification of gliomas and
  • 36:37prognostication.
  • 36:38Fortunately,
  • 36:39it's the most common IDH
  • 36:41mutation by far in glial
  • 36:43neoplasms.
  • 36:44Only about six or seven
  • 36:46percent
  • 36:47of gliomas have mutations
  • 36:49in IDH one or IDH
  • 36:50two that are different amino
  • 36:52acids substitutions.
  • 36:54And I'm gonna show you
  • 36:55a couple other nice examples
  • 36:56here. So this is, this
  • 36:58is the first example I
  • 36:59just mentioned, the high grade
  • 37:00glioma,
  • 37:01and you can see that
  • 37:02really beautiful immunoreactivity.
  • 37:05If IDH1 is wild type,
  • 37:06it's entirely negative.
  • 37:08And this is done now
  • 37:09every day in neuropathology
  • 37:11practice
  • 37:12everywhere,
  • 37:13where you're diagnosing glial neoplasms.
  • 37:17To show you one other
  • 37:18nice example,
  • 37:19I'm gonna just present this
  • 37:20as an unknown.
  • 37:22This is from an elderly
  • 37:23man who presented with small
  • 37:24bowel obstruction.
  • 37:26When the surgeon went in
  • 37:27and took out the segment
  • 37:28of small bowel,
  • 37:30you can see why there
  • 37:31was this very large
  • 37:33ulcerated mass that was kinking
  • 37:35the bowel,
  • 37:36growing into the lumen,
  • 37:38involving the submucosa and the
  • 37:39mucosa.
  • 37:41And if you look at
  • 37:41high power at this tumor,
  • 37:44it has a really undifferentiated
  • 37:46appearance,
  • 37:47a sheet
  • 37:48of epithelioid
  • 37:49or oval cells with abundant
  • 37:51pale cytoplasm
  • 37:53and a very high mitotic
  • 37:54rate.
  • 37:55So now we're dealing with
  • 37:57kind of the classic problem.
  • 37:58Here's a very poorly differentiated
  • 38:01malignancy.
  • 38:02What could it be? Is
  • 38:03it carcinoma, melanoma, sarcoma, something
  • 38:06else?
  • 38:07We do immunohistochemistry
  • 38:09and everything is negative.
  • 38:11So we're stuck.
  • 38:12We have an undifferentiated
  • 38:14malignant neoplasm,
  • 38:16which is the oncologist's favorite
  • 38:18diagnosis.
  • 38:19When you make the diagnosis,
  • 38:21they're totally fine. They know
  • 38:23what to do. That's a
  • 38:23joke because it's a really
  • 38:25big problem.
  • 38:27But in this case, we
  • 38:28did one other marker,
  • 38:30which was the BRAF V600E
  • 38:32specific antibody.
  • 38:34And as you can see,
  • 38:35it's beautifully positive in the
  • 38:36cytoplasm of these tumor cells.
  • 38:39And this is in fact
  • 38:40metastatic dedifferentiated
  • 38:41melanoma.
  • 38:43And what the surgeon didn't
  • 38:44know is this patient actually
  • 38:45had a history
  • 38:47of a locally advanced melanoma,
  • 38:48like fifteen years ago, I
  • 38:50think, on the back, but
  • 38:51nobody knew, but we're able
  • 38:53to solve it by this
  • 38:54antibody.
  • 38:55And this is a relatively
  • 38:56new
  • 38:57discovery
  • 38:58that there are a small
  • 39:00subset
  • 39:01of melanomas, usually metastatic but
  • 39:04occasionally primary,
  • 39:05that are entirely negative for
  • 39:08all the lineage markers. They
  • 39:09don't express any neural crest
  • 39:11markers or any melanoma
  • 39:13restricted antibodies.
  • 39:15S100,
  • 39:16Sox10, HMB, Melanate, tyrosines, they're
  • 39:18all negative.
  • 39:19And that's really difficult. This
  • 39:21is a challenging diagnosis.
  • 39:23If they're
  • 39:24entirely undifferentiated
  • 39:26from the beginning, then we
  • 39:27call them undifferentiated
  • 39:28melanoma.
  • 39:29If they started off with
  • 39:30a conventional melanoma
  • 39:32and then it recurred or
  • 39:33metastasized and lost its markers,
  • 39:35we call
  • 39:36them dedifferentiated
  • 39:37melanoma.
  • 39:39And one of the best
  • 39:40early studies on this topic
  • 39:41was from Abbas Agami from
  • 39:43Germany
  • 39:44who published a series of
  • 39:46these tumors and really talked
  • 39:47about
  • 39:48how we can recognize them
  • 39:49in surgical pathology, what testing
  • 39:51we can do
  • 39:52to help us.
  • 39:54There was a nice genomic
  • 39:56study by David Adams,
  • 39:58from United Kingdom,
  • 39:59which had very similar observations
  • 40:01with some more genomic testing.
  • 40:05And as I mentioned, until
  • 40:06we had this concept,
  • 40:09we're often left with this
  • 40:10descriptive, horrible, unhelpful diagnosis.
  • 40:13The clues to the diagnosis
  • 40:15sometimes are the anatomic site.
  • 40:18The axilla is a very
  • 40:19rare site for sarcomas,
  • 40:21but it's a very common
  • 40:23site for the first presentation
  • 40:25of metastatic melanoma to a
  • 40:27lymph node.
  • 40:29Sometimes these tumors have rhabdoid
  • 40:31cytology. In fact,
  • 40:33in adult malignant neoplasms,
  • 40:36the most common tumor with
  • 40:37rhabdoid cytoplasmic inclusions is metastatic
  • 40:40melanoma.
  • 40:41So that can be a
  • 40:42clue.
  • 40:43If you do genomic testing,
  • 40:46you can find the characteristic
  • 40:47mutations of melanoma.
  • 40:49BRAF, NRAS, KIT, NF one,
  • 40:52the other,
  • 40:54alterations you see in melanoma.
  • 40:56And if you use a
  • 40:57large panel that in part
  • 40:58of the algorithms, they will
  • 41:00read out particular mutation signatures.
  • 41:03You can find a UV
  • 41:04signature and you know that
  • 41:06it's metastatic melanoma and it's
  • 41:08not a sarcoma.
  • 41:10And I've shown you how
  • 41:10we have mutation specific immunohistochemistry.
  • 41:13Just a few more quick
  • 41:15examples.
  • 41:15This was an axillary mass
  • 41:17in a patient with no
  • 41:18known
  • 41:19history,
  • 41:20an undifferentiated
  • 41:22sheet like
  • 41:23epithelioid malignant neoplasm with open
  • 41:26chromatin, small nucleoli, and lots
  • 41:28of mitotic activity.
  • 41:31The only stain that was
  • 41:32positive was CAM five point
  • 41:34two.
  • 41:35This is a monoclonal antibody
  • 41:36that recognizes keratin eight. It
  • 41:38wasn't very strong, but there
  • 41:40was a little bit of
  • 41:40staining. So you could say,
  • 41:41well, maybe it's an undifferentiated
  • 41:43carcinoma.
  • 41:44We got a little bit
  • 41:45of keratin,
  • 41:46but, unfortunately, that was wrong.
  • 41:48It had PRAME expression
  • 41:50as well as RAS q
  • 41:51sixty one r, and this
  • 41:53is a metastatic undifferentiated melanoma.
  • 41:56And occasionally,
  • 41:58metastatic melanomas can have some
  • 41:59expression of keratins.
  • 42:01It's a well known diagnostic
  • 42:03pitfall for dometopathologists,
  • 42:05but it's definitely a source
  • 42:06of
  • 42:07challenge for us in surgical
  • 42:09pathology.
  • 42:11One other example, this was
  • 42:12an undifferentiated melanoma in an
  • 42:14axillary lymph node. This tumor
  • 42:17had some rhabdoid cytoplasmic
  • 42:19conclusions.
  • 42:20By meus to chemistry, it
  • 42:21reacted with absolutely nothing
  • 42:24except for BRAF V600E.
  • 42:28One other nice example,
  • 42:30Adrian Flanagan from London
  • 42:32discovered in two thousand thirteen,
  • 42:35the giant cell tumors of
  • 42:36bone
  • 42:37and chondroblastoma.
  • 42:39These are the two
  • 42:40very well known
  • 42:42locally aggressive tumors that arise
  • 42:44in the epiphysis of long
  • 42:45bones,
  • 42:46harbor mutations
  • 42:48in histone H3 genes,
  • 42:50the same gene that encodes
  • 42:52the histone three protein
  • 42:54that is trimethylated
  • 42:56in
  • 42:57loss of the trimethylation in
  • 42:59malignant peripheral nerve root tumor.
  • 43:01But in this case, there's
  • 43:02amino acid substitutions.
  • 43:04One particular substitution, g thirty
  • 43:07four w,
  • 43:08is found in eighty five
  • 43:09to ninety percent of giant
  • 43:11cell tumors of bone. There's
  • 43:13a different substitution
  • 43:14in chondroblastoma.
  • 43:16In most cases, the diagnosis
  • 43:18is pretty easy.
  • 43:19Radiology is distinctive.
  • 43:21We have mononuclear
  • 43:22cells and huge numbers of
  • 43:24osteoclasts that have very impressive
  • 43:26numbers of nuclei.
  • 43:28But if you're dealing with
  • 43:29a small biopsy
  • 43:31or the radiology is not
  • 43:32entirely definitive,
  • 43:34it's very useful to have
  • 43:35a surrogate
  • 43:36for these mutations.
  • 43:38So now we use this
  • 43:39histone H3G34W
  • 43:42mutation specific antibody for giant
  • 43:44cell tumor of bone.
  • 43:46As you can see, the
  • 43:47osteoclasts are not neoplastic, they're
  • 43:49reactive.
  • 43:50Even though we call it
  • 43:51giant cell tumor, the giant
  • 43:53cells are actually non neoplastic.
  • 43:54It's the mononuclear cells that
  • 43:56are positive,
  • 43:57but it's really a very
  • 43:58easy way to make the
  • 43:59diagnosis.
  • 44:01Very rarely,
  • 44:03giant cell tumors of bone
  • 44:04can transform
  • 44:05to high grade sarcomas.
  • 44:07They still retain
  • 44:09the G34W
  • 44:11or other histone H3
  • 44:13substitutions.
  • 44:17Now,
  • 44:17mentioning again something that I
  • 44:19that we talked about this
  • 44:20morning in the resident slide
  • 44:21seminar.
  • 44:22This is a fusion specific
  • 44:24antibody that was developed for
  • 44:25synovial sarcoma.
  • 44:29Synovial sarcoma is quite common.
  • 44:31As you all know, it's
  • 44:32one of the ten most
  • 44:33common sarcomas.
  • 44:35It's quite aggressive.
  • 44:36The ten year survival is
  • 44:38about fifty percent,
  • 44:40and it's defined by a
  • 44:41pathic mnemonic translocation
  • 44:43between chromosomes X and eighteen.
  • 44:46This results in fusions of
  • 44:48genes that have changed their
  • 44:50names a bit over the
  • 44:51years.
  • 44:51They're now named after the
  • 44:53tumor type and the chromosome.
  • 44:55So they're easy to remember.
  • 44:57SS18
  • 44:58and SSX. Synovial sarcoma
  • 45:00on chromosomes eighteen and chromosomes
  • 45:02X.
  • 45:03We have three different variants,
  • 45:05monophasic, which is a spindle
  • 45:07cell neoplasm,
  • 45:08biphasic that contains epithelial
  • 45:10glands,
  • 45:11and poorly differentiated that has
  • 45:13round cell morphology
  • 45:15that can be very difficult
  • 45:17to distinguish
  • 45:18from Ewing's sarcoma and other
  • 45:19round cell sarcomas.
  • 45:21And conventional markers are really
  • 45:23not very helpful
  • 45:25to diagnose synovial sarcoma.
  • 45:27And until quite recently in
  • 45:28most practices,
  • 45:30we would confirm the diagnosis
  • 45:32by sequencing or by FISH
  • 45:34to look for the fusion
  • 45:35or the SS18 rearrangement.
  • 45:38And a couple of years
  • 45:39ago, we worked with a
  • 45:40colleague, Segal Kadoch, who's a
  • 45:42scientist,
  • 45:43at the Dana Farber Cancer
  • 45:44Institute.
  • 45:45When Segal was a post
  • 45:46doc at Stanford before she
  • 45:48joined the faculty at Dana
  • 45:50Farber,
  • 45:51she discovered the mechanism of
  • 45:53transformation of cells
  • 45:55by the synovial sarcoma fusion
  • 45:56protein,
  • 45:57and she's become one of
  • 45:58the world experts in the
  • 46:00SWISNF
  • 46:01chromatin remodeling complex.
  • 46:03And she
  • 46:05recommended
  • 46:06amino acid sequences to use
  • 46:08to immunize animals
  • 46:09to develop these monoclonal antibodies.
  • 46:11And, essentially, we were just
  • 46:13a test lab for these
  • 46:14antibodies.
  • 46:15The company she worked with
  • 46:16kept sending us aliquots of
  • 46:18the antibodies
  • 46:19that worked beautifully in Western
  • 46:20blot, but most of them
  • 46:22didn't work at all. We
  • 46:23couldn't optimize them to get
  • 46:24any signal
  • 46:25in formal and fixed paraffin
  • 46:27embedded tissue administered chemistry.
  • 46:29And eventually,
  • 46:30in late
  • 46:31nineteen,
  • 46:33two thousand nineteen,
  • 46:34we finally,
  • 46:36uncovered two of their antibodies
  • 46:37that worked beautifully.
  • 46:39One of them is a
  • 46:39fusion antibody that recognizes the
  • 46:41sequence that crosses
  • 46:43the break point between the
  • 46:45two genes,
  • 46:46which was ninety five percent
  • 46:48sensitive and a hundred percent
  • 46:49specific
  • 46:50in this study that included
  • 46:52a range of
  • 46:53potential histologic mimics.
  • 46:55And we also found one
  • 46:56of their antibodies
  • 46:58directed against a conserved sequence
  • 47:00at the C terminus of
  • 47:02all the SSX proteins was
  • 47:04the opposite. Hundred percent sensitive
  • 47:07and a little bit less
  • 47:08specific.
  • 47:09And it works beautifully.
  • 47:11So this is genetic testing.
  • 47:13We're looking for the fusion
  • 47:14protein.
  • 47:15And every single nucleus is
  • 47:17positive because it's a genomic
  • 47:19alteration
  • 47:20in these cells.
  • 47:21This is classic monophasic synovial
  • 47:23sarcoma,
  • 47:24very cellular spindle cell neoplasm
  • 47:26that, as one of the
  • 47:27residents described this morning,
  • 47:29very little cytoplasm. They're almost
  • 47:31overlapping nuclei.
  • 47:33They often have these little
  • 47:34wiry collagen
  • 47:35bundles between the cells.
  • 47:37Beautiful reactivity
  • 47:39with the
  • 47:40SS18SSX
  • 47:42fusion specific antibody.
  • 47:44And this is poorly differentiated
  • 47:45synovial sarcoma
  • 47:47that can look very similar
  • 47:48to other high grade round
  • 47:50cell sarcomas.
  • 47:52And the fusion antibody is,
  • 47:53again, beautifully positive.
  • 47:57And finally, before I end,
  • 47:58I'm just gonna talk about
  • 48:00using immunohistochemistry
  • 48:01to screen
  • 48:02for familial predisposition syndromes.
  • 48:05You all know about mismatch
  • 48:07repair protein immunohistochemistry.
  • 48:09We've been doing this for
  • 48:10decades.
  • 48:11This is a very useful
  • 48:12way to screen for Lynch
  • 48:13syndrome
  • 48:14in colorectal endometrial adenocarcinoma,
  • 48:18upper urinary tract adenocarcinomas,
  • 48:20for example,
  • 48:21the tumor types that are
  • 48:22most common in patients with
  • 48:23Lynch syndrome with germline mutations.
  • 48:26And now that's become a
  • 48:27huge area of surgical pathology
  • 48:29practice.
  • 48:30Now that we have
  • 48:31immune checkpoint inhibitor therapy, which
  • 48:33is most effective
  • 48:35for cancers that have mismatch
  • 48:37repair deficiency
  • 48:39outside of Lynch syndrome as
  • 48:40well when they're sporadically inactivated
  • 48:42either by methylation of the
  • 48:44MLH1 promoter or by somatic
  • 48:46mutations, for example.
  • 48:48But we have a couple
  • 48:49other examples of how we
  • 48:50can use antibodies
  • 48:52to screen for the potential
  • 48:55alterations that that belies some
  • 48:57of these other
  • 48:59tumor syndromes.
  • 49:00The one I'm gonna mention
  • 49:02is succinate dehydrogenase.
  • 49:04We've known for quite some
  • 49:05time that patients with Kearney
  • 49:08Triad
  • 49:09described by Aden Kearney at
  • 49:10the Mayo Clinic in nineteen
  • 49:11seventy seven,
  • 49:13developed these three distinctive tumor
  • 49:15types,
  • 49:16unusual form of gastric
  • 49:18gastrointestinal
  • 49:19stromal tumor or GIST,
  • 49:21extra adrenal paraganglioma,
  • 49:23and pulmonary chondroma.
  • 49:25And we didn't really know
  • 49:27why for many years. This
  • 49:28is not a familial syndrome.
  • 49:30It's sporadic, and it usually
  • 49:31affects young women.
  • 49:34About ten years ago, it
  • 49:35was discovered
  • 49:36that this is caused by
  • 49:38hypermethylation
  • 49:39of the SDHC promoter.
  • 49:42There is a much more
  • 49:43common
  • 49:44familial paraganglioma
  • 49:46syndrome, which is responsible for
  • 49:48about twenty percent of all
  • 49:49paragangliomas,
  • 49:51which is caused by germline
  • 49:53mutations
  • 49:54in either SDHB,
  • 49:56SDHC, or SDHD.
  • 49:58This has very high penetrance,
  • 50:01and you could use immunohistochemistry
  • 50:02as a screen as I'll
  • 50:03come back to in a
  • 50:04few minutes.
  • 50:05One other syndrome is called
  • 50:07Kearney Stratakis, which is very
  • 50:09similar to Kearney triad, except
  • 50:11these patients do not develop
  • 50:13pulmonary chondromas.
  • 50:15And this is essentially just
  • 50:16a variant of the familial
  • 50:17paraganglioma
  • 50:18syndrome where they also develop
  • 50:20these distinctive gists.
  • 50:23I'm sure many of you
  • 50:24know in surgical pathology
  • 50:26that we really can't predict
  • 50:28which paragangliomas
  • 50:29are going to be malignant.
  • 50:31That's been something we've tried
  • 50:32to deal with for many
  • 50:33decades without a lot of
  • 50:34success.
  • 50:36It turns out
  • 50:37the most
  • 50:38powerful predictor of malignancy in
  • 50:41paragangliomas
  • 50:42is SDHB
  • 50:43mutation,
  • 50:45germline mutations.
  • 50:46Patients with this syndrome who
  • 50:48have that particular alteration
  • 50:50have a risk of metastasis
  • 50:51that's about fifty percent.
  • 50:53There's also a very unusual
  • 50:55kind of narrow anatomic distribution
  • 50:58based on what the underlying,
  • 51:01genetic alteration is, as you
  • 51:03can see from this table.
  • 51:07So it turns out that
  • 51:09irrespective of which gene is
  • 51:11mutated
  • 51:12or if SDHC has promoter
  • 51:14hypermethylation,
  • 51:16the SDHB
  • 51:17part of this enzyme complex
  • 51:19gets degraded.
  • 51:20It requires stability of all
  • 51:21the elements in order for
  • 51:23it to sit there.
  • 51:24So you can use one
  • 51:25antibody for SDHB
  • 51:27as a surrogate for an
  • 51:29inactivation of the complex.
  • 51:30So this has now become
  • 51:31a very easy way
  • 51:33to screen
  • 51:34for the familial paraganglioma
  • 51:36syndrome.
  • 51:37The first nice paper demonstrating
  • 51:39how you might do this
  • 51:40in clinical practice
  • 51:41was published in Lancet Oncology
  • 51:43by a group from the
  • 51:44Netherlands,
  • 51:45and this has become
  • 51:47standard of practice for us
  • 51:48now,
  • 51:49in collaboration with, Justine Barletta,
  • 51:51our head of endocrine pathology,
  • 51:53and our colleagues at the
  • 51:55genetics
  • 51:56clinic at the Dana Farber
  • 51:57Cancer Institute.
  • 51:58Every patient with periganglioma
  • 52:00or pheochromocytoma
  • 52:02gets immunohistochemistry
  • 52:03for SDHB as a screen
  • 52:05to direct them for,
  • 52:07germline testing.
  • 52:09This is a pheochromocytoma
  • 52:11of the adrenal gland with
  • 52:12normal staining.
  • 52:13It's this mitochondrial
  • 52:15granular cytoplasmic pattern, as you
  • 52:17can see here.
  • 52:18This is an SDHB
  • 52:20mutants paraganglioma.
  • 52:22In contrast, the tumor cells
  • 52:25show a complete loss of
  • 52:26the normal cytoplasmic
  • 52:27staining,
  • 52:28whereas the endothelial
  • 52:30cells
  • 52:32and the sustentacular
  • 52:33cells,
  • 52:34those specialized Schwann cells that
  • 52:36invest the individual
  • 52:38zelbollen of the paraganglioma,
  • 52:40show normal granular staining.
  • 52:43As I mentioned, the gist
  • 52:45that arise in the context
  • 52:46of STH deficiency
  • 52:48are really special.
  • 52:50They have this multi nodular
  • 52:52plexiform architecture,
  • 52:54as you can see in
  • 52:55the scanning images on the
  • 52:56left and
  • 52:57the intermediate power
  • 52:58on the right, they're usually
  • 53:00epithelioid
  • 53:01and they have a very
  • 53:03high rate of spreading to
  • 53:04regional lymph nodes.
  • 53:05About thirty percent of patients
  • 53:08will have perigastric
  • 53:09lymphometastases
  • 53:11at the time of their
  • 53:12partial gastrectomy.
  • 53:13And this is in contrast
  • 53:15to KIT mutant GIS,
  • 53:16which spread to lymph nodes
  • 53:18in about zero point one
  • 53:19percent of cases. That's an
  • 53:20incredibly rare event.
  • 53:22These tumors
  • 53:24very frequently metastasize
  • 53:26to the perineal cavity or
  • 53:28the liver, but they have
  • 53:29a relatively indolent growth, and
  • 53:31some patients can survive
  • 53:33for years without therapy, without
  • 53:36getting
  • 53:37really sick. Unfortunately, many of
  • 53:39them eventually succumb, but they
  • 53:40can have a protracted course,
  • 53:42which is totally different from
  • 53:44KIT mutant GIS
  • 53:45without targeted therapy. Once they
  • 53:47metastasize,
  • 53:48patients die of disease within
  • 53:50about twelve to eighteen months.
  • 53:52So totally different biology. They
  • 53:53don't respond to
  • 53:55kit inhibitors, obviously, because they're
  • 53:57driven by a totally different
  • 53:58pathway.
  • 54:00And at the same time,
  • 54:01we can't predict
  • 54:03which patients are going to
  • 54:04metastasize
  • 54:05for our risk stratification criteria.
  • 54:08So this is a special
  • 54:09tumor type which is being
  • 54:11separated from the rest of
  • 54:12the GISTS
  • 54:13in the twenty twenty six
  • 54:15WHO classification,
  • 54:17both the digestive disease volume
  • 54:18and the soft tissue volume
  • 54:20which will come out later
  • 54:21this year.
  • 54:23Anthony Gill from Sydney, Australia
  • 54:25first showed us how we
  • 54:26can use
  • 54:27immunohistochemistry
  • 54:28for SDHB to identify these
  • 54:30tumors.
  • 54:31This is very easy to
  • 54:32apply. It works very well.
  • 54:34And similar to what we
  • 54:35saw with the paragangliomas,
  • 54:37we have a complete loss
  • 54:39of normal cytoplasmic
  • 54:40staining
  • 54:41in the tumor cells. And
  • 54:43again, we have an internal
  • 54:44control,
  • 54:45endothelium
  • 54:46or
  • 54:47mucosa
  • 54:48or the smooth muscle of
  • 54:50the muscularis propria.
  • 54:53So my closing comments,
  • 54:55I've shown you we have
  • 54:56this rapid evolution of a
  • 54:58new generation of markers,
  • 55:00femininistic chemistry,
  • 55:01that are making it really
  • 55:03easy to identify
  • 55:04the molecular genetic alterations that
  • 55:07define various cancer types,
  • 55:09helping us in our surgical
  • 55:10pathology practice,
  • 55:12replacing molecular genetic testing in
  • 55:14many cases.
  • 55:16In addition,
  • 55:17this is a nice form
  • 55:18of rapid and inexpensive
  • 55:20predictive testing for targeted therapies.
  • 55:23And finally, just showed you
  • 55:24one example
  • 55:25of how we can use
  • 55:26this technique
  • 55:27as broad screening for familial
  • 55:29cancer predisposition
  • 55:31syndromes.
  • 55:32Thank you again for inviting
  • 55:34me to share this session
  • 55:36with you today, and I'm
  • 55:37happy to answer any questions.
  • 55:52Yes. Great talk. Thank you.
  • 55:55I just have a question
  • 55:57about the the first example.
  • 56:02Because when I was a
  • 56:03resident,
  • 56:04I was looking at this
  • 56:05at the NIH, and I
  • 56:06had no idea. I'm tired.
  • 56:08This is tumor. I actually
  • 56:10asked the attending
  • 56:11who's trying to teach me
  • 56:12already.
  • 56:14That's all situated.
  • 56:16Exactly. And,
  • 56:18I I it's the specific
  • 56:20form of pericyclinoma
  • 56:22that's that's responsive to that,
  • 56:25that marker, is it just
  • 56:26present in the nose, or
  • 56:27does that occur also for
  • 56:29for Yeah. No. It's amazing.
  • 56:31This is only sinonasal.
  • 56:32So this is a very
  • 56:33special tumor
  • 56:35that only arises in the
  • 56:36sinonasal tract. All the other
  • 56:38parasitic tumors in the rest
  • 56:39of the body have totally
  • 56:41different
  • 56:41genetics. Like, glomus tumors and
  • 56:43some myoperacytomas
  • 56:45have notch gene fusions.
  • 56:47Totally different.
  • 56:49It's really it's amazing. This
  • 56:50is only sino nasal.
  • 56:52And, you know, it's such
  • 56:53a beautiful,
  • 56:55you know,
  • 56:56example of fleshing out all
  • 56:58of these very, you know,
  • 56:59rare things, but with very
  • 57:01specific genetic alteration.
  • 57:03Is it
  • 57:04your sense that this is
  • 57:06gonna continue, and and this
  • 57:08is gonna play out building
  • 57:09an?
  • 57:10Yeah. And we we so
  • 57:12the question is, you know,
  • 57:13using chemistry
  • 57:15to look for the genetic
  • 57:16alterations, is this gonna kinda
  • 57:17continue? And, you know, we
  • 57:18still are working on more
  • 57:20antibodies to identify fusions.
  • 57:23I think we have a
  • 57:24long way to go to
  • 57:24make it useful, but, you
  • 57:26know, many people kinda struggle
  • 57:27with, well, in a practice
  • 57:29that has very easy assets
  • 57:30to to fusion testing by
  • 57:32RNA NGS,
  • 57:34should we just do that
  • 57:34instead of developing these new
  • 57:36antibodies? And it sort of
  • 57:37depends on volume and your
  • 57:39practice models.
  • 57:41Some of the relatively common
  • 57:42ones that we do see
  • 57:43with some frequency, I think
  • 57:45immunohistochemistry
  • 57:46makes a lot of sense.
  • 57:47Probably if you work at
  • 57:48a cancer center that doesn't
  • 57:49have as many of a
  • 57:50particular group of tumors,
  • 57:52sequencing is probably preferable.
  • 57:54Yes. Yeah.
  • 57:56Very nice talk. Thank you.
  • 57:58This is slightly peripheral and
  • 57:59maybe somewhat of a trivial
  • 58:01question, but since you were
  • 58:02the head of the, you
  • 58:03know, that little while,
  • 58:06how do you manage the
  • 58:08logistics of this other than
  • 58:09getting, you know, like a
  • 58:10not your old woman to
  • 58:11go in every day and
  • 58:13hand singing stuff? Like, you're
  • 58:14having all these additional
  • 58:16things added in all Yeah.
  • 58:19Yeah. So the question is
  • 58:20sort of how do you
  • 58:21logistically, how do you deal
  • 58:22with this? And he was
  • 58:24referring to our now retired
  • 58:25head of hematopathology
  • 58:27who liked to do her
  • 58:28own pipetting and her own
  • 58:29lab for hematopathology,
  • 58:30Jerry Pincus, who's amazing, brilliant
  • 58:33hematopathologist
  • 58:34and one of the pioneers
  • 58:35of immunohistochemistry,
  • 58:36when they were all frozen
  • 58:37sections, she was doing that
  • 58:38as well. She's amazing.
  • 58:41You definitely have to have
  • 58:42a very good technical group.
  • 58:44I'm very lucky. My lab
  • 58:45supervisor,
  • 58:46she's a an immunohistochemical
  • 58:49technologist who'd been doing it
  • 58:50for thirty years.
  • 58:51She's really adept at optimizing
  • 58:53antibodies. So
  • 58:55I work with her to
  • 58:56identify a commercially available source
  • 58:59where it's a company that
  • 59:00I pretty much trust that
  • 59:01I think they've validated enough
  • 59:02that I believe them,
  • 59:04that it works in FFPE.
  • 59:05Sometimes they're still lying and
  • 59:07it's wrong, but often they
  • 59:08work. So I'll order an
  • 59:09antibody and I'll just have
  • 59:11a hypothesis. I'll test it
  • 59:13in a tumor with a
  • 59:13known alteration.
  • 59:15If it works, then I
  • 59:16just do a small pilot
  • 59:17with a resident or fellow.
  • 59:18So they'll have a nice
  • 59:19project to present at one
  • 59:20of our use cap meetings
  • 59:22and a nice proof of
  • 59:23principle paper. And then I
  • 59:25bring it on as a
  • 59:26clinical test. But it definitely
  • 59:27takes a lot of legwork,
  • 59:29takes technical expertise, it takes
  • 59:32energy for a trainee or
  • 59:34a junior colleague to
  • 59:36pull a bunch of cases
  • 59:37with known genetics and the
  • 59:39differential diagnosis,
  • 59:40you know, so that you
  • 59:41can make sure
  • 59:42that the specificity is enough
  • 59:44for it to be a
  • 59:45valuable in practice.
  • 59:47It is not
  • 59:48it is not straightforward unless
  • 59:49you have the infrastructure to
  • 59:51support that. And then I
  • 59:52guess I'm curious on the
  • 59:54latter half. Once you've established
  • 59:56Yeah. How do you get
  • 59:56it into your workflows? You're
  • 59:58getting the turnaround
  • 59:59of such a large
  • 01:00:00panel panel of tests so
  • 01:00:02many places have been. Yeah.
  • 01:00:04The question is about turnaround
  • 01:00:05and bringing it into the
  • 01:00:06clinical armamentarium.
  • 01:00:08We we only do one
  • 01:00:09run a day still.
  • 01:00:12Yeah. We we do one
  • 01:00:13immunosy chemistry run a day.
  • 01:00:15Every morning, they come out
  • 01:00:16at, like, two o'clock, and
  • 01:00:17we just have enough machines
  • 01:00:19that we can run a
  • 01:00:21bunch of tests.
  • 01:00:22I don't know. It's like,
  • 01:00:23you need a lot of
  • 01:00:24machines. If you have a
  • 01:00:25very high volume practice, we
  • 01:00:26run probably seven hundred
  • 01:00:29tests a day. It's a
  • 01:00:30lot
  • 01:00:31of lot of machines.
  • 01:00:35Yes.
  • 01:00:36The few statements are not
  • 01:00:37the UPR and Yes. Not
  • 01:00:39but the central plastic. It's
  • 01:00:40very hard dealing with the
  • 01:00:41setting.
  • 01:00:44Yes. How do you handle
  • 01:00:46this with this IFC?
  • 01:00:48Yeah. I think you have
  • 01:00:49to make sure that your
  • 01:00:50sort of signal to noise
  • 01:00:52ratio is is enough. And
  • 01:00:54when it's a universally expressed
  • 01:00:56protein, for example,
  • 01:00:57if you really crank it
  • 01:00:58as it were and you
  • 01:00:59get a very strong signal
  • 01:01:00and you're looking for loss,
  • 01:01:02then you can feel confident
  • 01:01:03there is true loss. I
  • 01:01:04think the problem
  • 01:01:05is when you've optimized an
  • 01:01:07antibody
  • 01:01:08and the signal's weak and
  • 01:01:09everything, then it's very hard
  • 01:01:11to decide if there's loss,
  • 01:01:12especially as you said if
  • 01:01:14it's cytoplasmic. So you have
  • 01:01:15to make sure the signal's
  • 01:01:17really strong. So we we
  • 01:01:19actually use some antibody detection
  • 01:01:21kits where the chemistry really
  • 01:01:23boosts the signal even if
  • 01:01:25it's not kinda standard practice
  • 01:01:27when you're dealing with some
  • 01:01:28antibodies that have pretty weak
  • 01:01:30results.
  • 01:01:31And some of them are
  • 01:01:32the ones that we really
  • 01:01:33like to use, like the
  • 01:01:34highly sensitive ALK and ROS1
  • 01:01:36and BRAF e six hundred
  • 01:01:37d. The antibodies aren't that
  • 01:01:38strong, so you really have
  • 01:01:39to boost the signal so
  • 01:01:41you can believe it that
  • 01:01:42it when it's positive, it's
  • 01:01:43real. And with loss, it's
  • 01:01:45the same problem.
  • 01:01:46So a lot of it's
  • 01:01:47just kind of validation and
  • 01:01:48optimization and feeling comfortable with
  • 01:01:50the results.
  • 01:01:51Yeah.
  • 01:01:53Thanks.
  • 01:01:54Thanks.
  • 01:01:55I think I've seen those,
  • 01:01:58platforms, like, moving form, code
  • 01:02:00expedite to a ton of
  • 01:02:01things that once it's Yeah.
  • 01:02:02Even that color is. So,
  • 01:02:04you know, you really have
  • 01:02:05that, you know, talk sort
  • 01:02:07of look. Yeah. So, like,
  • 01:02:08doing all of these on
  • 01:02:09one session.
  • 01:02:11Do you think
  • 01:02:12we're pretty close, somewhat close
  • 01:02:14to doing that instead of
  • 01:02:15our HC?
  • 01:02:16Yeah. I mean, I so
  • 01:02:17the question is about
  • 01:02:19the technologies that are sort
  • 01:02:20of multiplexing in really impressive
  • 01:02:22ways, often using kind of
  • 01:02:23digital,
  • 01:02:25and artificial intelligence can be
  • 01:02:27very supportive of that. You
  • 01:02:28have people in your department
  • 01:02:29who know a lot more
  • 01:02:30about that than I do.
  • 01:02:31I don't do any of
  • 01:02:31that. I do like very
  • 01:02:33old school immunosystem chemistry, and
  • 01:02:35I don't really, I don't
  • 01:02:36keep abreast of that technology
  • 01:02:38enough to know how close
  • 01:02:39we are to routine implementation.
  • 01:02:41But you had a question
  • 01:02:42or comment? Yes. I guess.
  • 01:02:44Thanks. So everything you should
  • 01:02:46list today was really fascinating,
  • 01:02:47but it's all minor. Yes.
  • 01:02:49The following that continuous expression
  • 01:02:52Yes. Yeah. The question is,
  • 01:02:54these are all binary, and
  • 01:02:55that's exactly right. So for
  • 01:02:57me, colorimetric,
  • 01:02:59right field, immuno chemistry,
  • 01:03:02unless it's binary,
  • 01:03:03I don't really know how
  • 01:03:04to do it. And I
  • 01:03:05know that you are doing
  • 01:03:07a lot of great techniques
  • 01:03:08to try to get readouts
  • 01:03:09that are much more granular
  • 01:03:11along a spectrum. But for
  • 01:03:13me, I think using these
  • 01:03:15old school techniques,
  • 01:03:17you can't really get very
  • 01:03:19good gradations of intensity of
  • 01:03:21staining. So I am really
  • 01:03:22just looking for genetic alterations
  • 01:03:24that are plus minus. And
  • 01:03:26you definitely need other methods
  • 01:03:28to be able to get
  • 01:03:30a a much more kinda
  • 01:03:32active range of expression of
  • 01:03:33proteins.
  • 01:03:35Yeah. And, obviously, your department
  • 01:03:37has done a lot on
  • 01:03:38this, and I I've read
  • 01:03:39a lot of it, and
  • 01:03:40it's very impressive, but I
  • 01:03:41don't do that stuff.
  • 01:03:44Yeah. Please.
  • 01:04:07Yeah.
  • 01:04:09Yeah. Yeah. The question is
  • 01:04:10in in sort of resource
  • 01:04:12poor settings
  • 01:04:13that really are don't or
  • 01:04:14might never have access to
  • 01:04:16genomic testing of any kind,
  • 01:04:18does do these forms of
  • 01:04:19immunohistochemistry,
  • 01:04:20is that a possibility? And
  • 01:04:22again, I think that's
  • 01:04:23this is still not inexpensive.
  • 01:04:26So I know that in
  • 01:04:27many countries, even immunohistochemistry
  • 01:04:29is impossible. But, you know,
  • 01:04:30for example, you know, we
  • 01:04:31do a lot of outreach
  • 01:04:32with some countries through the
  • 01:04:34Partners in Health kind of,
  • 01:04:35you know, organization, including, like,
  • 01:04:37in in Rwanda.
  • 01:04:39And we've helped set up
  • 01:04:40a laboratory there where they
  • 01:04:41do immunohistochemistry.
  • 01:04:43We kinda help advise the
  • 01:04:44panel and some of the
  • 01:04:46relatively common sarcomas
  • 01:04:48that they see in their
  • 01:04:49population, they actually get some
  • 01:04:50of these antibodies. So I
  • 01:04:52think that certainly,
  • 01:04:54you need to have some
  • 01:04:55level of expertise by the
  • 01:04:57pathologist, which is another big
  • 01:04:58problem because
  • 01:04:59not all countries have the
  • 01:05:01kinds of training that the
  • 01:05:02Western world does for
  • 01:05:04diagnostic immunoistochemistry
  • 01:05:05and surgical pathology. But, I
  • 01:05:08mean, really, I hope that
  • 01:05:09this is helpful for
  • 01:05:11settings where they don't have
  • 01:05:12any genetic or or, you
  • 01:05:13know, molecular genetic testing.
  • 01:05:18Well, thank you again so
  • 01:05:19much for for the invitation.